matrix_market.c

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/*************************************************************************
 * Copyright (c) 2011 AT&T Intellectual Property
 * All rights reserved. This program and the accompanying materials
 * are made available under the terms of the Eclipse Public License v1.0
 * which accompanies this distribution, and is available at
 * https://www.eclipse.org/legal/epl-v10.html
 *
 * Contributors: Details at https://graphviz.org
 *************************************************************************/
 
#include "config.h"
 
#include "matrix_market.h"
#include "mmio.h"
#include <sparse/SparseMatrix.h>
#include <stdbool.h>
#include <stdio.h>
#include <util/alloc.h>
 
SparseMatrix SparseMatrix_import_matrix_market(FILE *f) {
  matrix_shape_t shape;
  double *val = NULL;
  int m, n;
  void *vp = NULL;
  SparseMatrix A = NULL;
  int c;
 
  if ((c = fgetc(f)) != '%') {
    ungetc(c, f);
    return NULL;
  }
  ungetc(c, f);
  if (mm_read_banner(f, &shape) != 0) {
#ifdef DEBUG
    printf("Could not process Matrix Market banner.\n");
#endif
    return NULL;
  }
 
  /* find out size of sparse matrix .... */
  size_t nz;
  if (mm_read_mtx_crd_size(f, &m, &n, &nz) != 0) {
    return NULL;
  }
  /* reseve memory for matrices */
 
  int *I = gv_calloc(nz, sizeof(int));
  int *J = gv_calloc(nz, sizeof(int));
 
  val = gv_calloc(nz, sizeof(double));
  for (size_t i = 0; i < nz; i++) {
    int num = fscanf(f, "%d %d %lg\n", &I[i], &J[i], &val[i]);
    if (num != 3) {
      goto done;
    }
    I[i]--; /* adjust from 1-based to 0-based */
    J[i]--;
  }
  if (shape == MS_SYMMETRIC) {
    I = gv_recalloc(I, nz, 2 * nz, sizeof(int));
    J = gv_recalloc(J, nz, 2 * nz, sizeof(int));
    val = gv_recalloc(val, nz, 2 * nz, sizeof(double));
    const size_t nzold = nz;
    for (size_t i = 0; i < nzold; i++) {
      if (I[i] != J[i]) {
        I[nz] = J[i];
        J[nz] = I[i];
        val[nz++] = val[i];
      }
    }
  } else if (shape == MS_SKEW) {
    I = gv_recalloc(I, nz, 2 * nz, sizeof(int));
    J = gv_recalloc(J, nz, 2 * nz, sizeof(int));
    val = gv_recalloc(val, nz, 2 * nz, sizeof(double));
    const size_t nzold = nz;
    for (size_t i = 0; i < nzold; i++) {
      if (I[i] == J[i]) { // skew symm should have no diag
        goto done;
      }
      I[nz] = J[i];
      J[nz] = I[i];
      val[nz++] = -val[i];
    }
  } else if (shape == MS_HERMITIAN) {
    goto done;
  }
  vp = val;
 
  A = SparseMatrix_from_coordinate_arrays(nz, m, n, I, J, vp, MATRIX_TYPE_REAL,
                                          sizeof(double));
done:
  free(I);
  free(J);
  free(val);
 
  if (A != NULL && shape == MS_SYMMETRIC) {
    A->is_symmetric = true;
    A->is_pattern_symmetric = true;
  }
 
  return A;
}