sgd.c File Reference

#include <assert.h>
#include <cgraph/alloc.h>
#include <cgraph/bitarray.h>
#include <limits.h>
#include <neatogen/neato.h>
#include <neatogen/sgd.h>
#include <neatogen/dijkstra.h>
#include <neatogen/randomkit.h>
#include <neatogen/neatoprocs.h>
#include <math.h>
#include <stdlib.h>

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Functions
static float	calculate_stress (float *pos, term_sgd *terms, int n_terms)
static void	fisheryates_shuffle (term_sgd *terms, int n_terms)
static graph_sgd *	extract_adjacency (graph_t *G, int model)
static void	free_adjacency (graph_sgd *graph)
void	sgd (graph_t *G, int model)

Variables
static rk_state	rstate

Function Documentation

calculate_stress()

static float calculate_stress ( float *  pos, term_sgd *  terms, int  n_terms  )

static

Definition at line 14 of file sgd.c.

References dx, dy, term_sgd::i, and term_sgd::j.

Referenced by sgd().

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extract_adjacency()

static graph_sgd * extract_adjacency ( graph_t *  G, int  model  )

static

Definition at line 41 of file sgd.c.

References agfstedge(), agfstnode(), aghead, agnxtedge(), agnxtnode(), agtail, bitarray_get(), bitarray_new(), bitarray_reset(), bitarray_set(), ED_dist, G, graph(), gv_alloc(), gv_calloc(), intersect(), isFixed, MODEL_SHORTPATH, MODEL_SUBSET, and ND_id.

Referenced by sgd().

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fisheryates_shuffle()

static void fisheryates_shuffle ( term_sgd *  terms, int  n_terms  )

static

Definition at line 27 of file sgd.c.

References rk_interval(), and rstate.

Referenced by sgd().

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free_adjacency()

static void free_adjacency ( graph_sgd *  graph )

static

Definition at line 138 of file sgd.c.

References bitarray_reset(), free(), and graph().

Referenced by sgd().

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sgd()

void sgd	(	graph_t *	G,
		int	model
	)

Definition at line 147 of file sgd.c.

References agnnodes(), agwarningf(), calculate_stress(), dijkstra_sgd(), dx, dy, elapsed_sec(), Epsilon, extract_adjacency(), fisheryates_shuffle(), free(), free_adjacency(), G, GD_neato_nlist, graph(), gv_calloc(), term_sgd::i, initial_positions(), isFixed, term_sgd::j, MaxIter, MODEL_CIRCUIT, MODEL_MDS, MODEL_SHORTPATH, mu, ND_pos, offset, rk_seed(), rstate, start_timer(), Verbose, and term_sgd::w.

Referenced by neatoLayout().

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Variable Documentation

rstate

rk_state rstate

static

Definition at line 26 of file sgd.c.

Referenced by fisheryates_shuffle(), and sgd().