Graphviz 14.0.0~dev.20250918.1035
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#include <assert.h>
#include <cgraph/cgraph.h>
#include <dotgen/dot.h>
#include <inttypes.h>
#include <limits.h>
#include <stdbool.h>
#include <stdint.h>
#include <stdlib.h>
#include <string.h>
#include <util/alloc.h>
#include <util/bitarray.h>
#include <util/exit.h>
#include <util/gv_math.h>
#include <util/itos.h>
#include <util/list.h>
#include <util/streq.h>
Go to the source code of this file.
Data Structures | |
struct | adjmatrix_t |
struct | info_t |
Macros | |
#define | MARK(v) (ND_mark(v)) |
#define | saveorder(v) (ND_coord(v)).x |
#define | flatindex(v) ((size_t)ND_low(v)) |
#define | ND_x(n) (((info_t*)AGDATA(n))->x) |
#define | ND_lo(n) (((info_t*)AGDATA(n))->lo) |
#define | ND_hi(n) (((info_t*)AGDATA(n))->hi) |
#define | ND_np(n) (((info_t*)AGDATA(n))->np) |
#define | ND_idx(n) (ND_order(ND_np(n))) |
#define | isBackedge(e) (ND_idx(aghead(e)) > ND_idx(agtail(e))) |
#define | VAL(node, port) (MC_SCALE * ND_order(node) + (port).order) |
#define | ORDINARY 0 |
#define | SINGLETON 1 |
#define | VIRTUALNODE 2 |
#define | NTYPES 3 |
#define | C_EE 1 |
#define | C_VS 2 |
#define | C_SS 2 |
#define | C_VV 4 |
Functions | |
static bool | matrix_get (adjmatrix_t *me, size_t row, size_t col) |
static void | matrix_set (adjmatrix_t *me, size_t row, size_t col) |
static bool | medians (graph_t *g, int r0, int r1) |
static int | nodeposcmpf (const void *, const void *) |
static int | edgeidcmpf (const void *, const void *) |
static void | flat_breakcycles (graph_t *g) |
static void | flat_reorder (graph_t *g) |
static void | flat_search (graph_t *g, node_t *v) |
static void | init_mincross (graph_t *g) |
static void | merge2 (graph_t *g) |
static void | init_mccomp (graph_t *g, size_t c) |
static void | cleanup2 (graph_t *g, int64_t nc) |
static int64_t | mincross_clust (graph_t *g) |
static int64_t | mincross (graph_t *g, int startpass) |
static void | mincross_step (graph_t *g, int pass) |
static void | mincross_options (graph_t *g) |
static void | save_best (graph_t *g) |
static void | restore_best (graph_t *g) |
static adjmatrix_t * | new_matrix (size_t initial_rows, size_t initial_columns) |
static void | free_matrix (adjmatrix_t *p) |
static int | ordercmpf (const void *, const void *) |
static int64_t | ncross (void) |
static void | emptyComp (graph_t *sg) |
static Agnode_t * | findSource (Agraph_t *g, Agraph_t *sg) |
static int | topsort (Agraph_t *g, Agraph_t *sg, Agnode_t **arr) |
static int | getComp (graph_t *g, node_t *n, graph_t *comp, int *indices) |
static void | fixLabelOrder (graph_t *g, rank_t *rk) |
for each pair of nodes (labels), we add an edge | |
void | checkLabelOrder (graph_t *g) |
int | dot_mincross (graph_t *g) |
static int | betweenclust (edge_t *e) |
static void | do_ordering_node (graph_t *g, node_t *n, bool outflag) |
static void | do_ordering (graph_t *g, bool outflag) |
static void | do_ordering_for_nodes (graph_t *g) |
static void | ordered_edges (graph_t *g) |
static bool | left2right (graph_t *g, node_t *v, node_t *w) |
static int64_t | in_cross (node_t *v, node_t *w) |
static int | out_cross (node_t *v, node_t *w) |
static void | exchange (node_t *v, node_t *w) |
static int64_t | transpose_step (graph_t *g, int r, bool reverse) |
static void | transpose (graph_t *g, bool reverse) |
static void | merge_components (graph_t *g) |
static node_t * | neighbor (node_t *v, int dir) |
static bool | is_a_normal_node_of (graph_t *g, node_t *v) |
static bool | is_a_vnode_of_an_edge_of (graph_t *g, node_t *v) |
static bool | inside_cluster (graph_t *g, node_t *v) |
static node_t * | furthestnode (graph_t *g, node_t *v, int dir) |
void | save_vlist (graph_t *g) |
void | rec_save_vlists (graph_t *g) |
void | rec_reset_vlists (graph_t *g) |
static Agraph_t * | realFillRanks (Agraph_t *g, bitarray_t *ranks, Agraph_t *sg) |
static void | fillRanks (Agraph_t *g) |
static void | flat_rev (Agraph_t *g, Agedge_t *e) |
void | allocate_ranks (graph_t *g) |
int | install_in_rank (graph_t *g, node_t *n) |
int | build_ranks (graph_t *g, int pass) |
void | enqueue_neighbors (node_queue_t *q, node_t *n0, int pass) |
static bool | constraining_flat_edge (Agraph_t *g, Agedge_t *e) |
typedef | LIST (node_t *) |
static void | reorder (graph_t *g, int r, bool reverse, bool hasfixed) |
static int | local_cross (elist l, int dir) |
static int64_t | rcross (graph_t *g, int r) |
static bool | flat_mval (node_t *n) |
static int | endpoint_class (node_t *n) |
void | virtual_weight (edge_t *e) |
Variables | |
static int | MinQuit |
static const double | Convergence = .995 |
static graph_t * | Root |
static int | GlobalMinRank |
static int | GlobalMaxRank |
static edge_t ** | TE_list |
static int * | TI_list |
static bool | ReMincross |
static int | table [NTYPES][NTYPES] |
#define C_EE 1 |
Definition at line 1818 of file mincross.c.
#define C_SS 2 |
Definition at line 1820 of file mincross.c.
#define C_VS 2 |
Definition at line 1819 of file mincross.c.
#define C_VV 4 |
Definition at line 1821 of file mincross.c.
#define flatindex | ( | v | ) | ((size_t)ND_low(v)) |
Definition at line 112 of file mincross.c.
Definition at line 269 of file mincross.c.
#define MARK | ( | v | ) | (ND_mark(v)) |
Definition at line 110 of file mincross.c.
Definition at line 253 of file mincross.c.
Definition at line 255 of file mincross.c.
Definition at line 252 of file mincross.c.
Definition at line 254 of file mincross.c.
Definition at line 251 of file mincross.c.
#define NTYPES 3 |
Definition at line 1816 of file mincross.c.
#define ORDINARY 0 |
Definition at line 1813 of file mincross.c.
#define saveorder | ( | v | ) | (ND_coord(v)).x |
Definition at line 111 of file mincross.c.
#define SINGLETON 1 |
Definition at line 1814 of file mincross.c.
Definition at line 1708 of file mincross.c.
#define VIRTUALNODE 2 |
Definition at line 1815 of file mincross.c.
void allocate_ranks | ( | graph_t * | g | ) |
Definition at line 1223 of file mincross.c.
References agfstnode(), agfstout(), aghead, agnxtnode(), agnxtout(), agtail, free(), GD_maxrank, GD_minrank, GD_rank, gv_calloc(), ND_rank, and SWAP.
Referenced by expand_cluster(), and init_mincross().
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Definition at line 511 of file mincross.c.
References aghead, agtail, ED_to_orig, and ND_clust.
Referenced by do_ordering_node().
int build_ranks | ( | Agraph_t * | g, |
int | pass | ||
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Definition at line 1299 of file mincross.c.
References aghead, agroot(), agtail, CLUSTER, dot_root(), enqueue_neighbors(), exchange, GD_flip, GD_maxrank, GD_minrank, GD_nlist, GD_rank, install_cluster(), install_in_rank(), LIST_FREE, LIST_IS_EMPTY, LIST_POP_FRONT, LIST_PUSH_BACK, MARK, ncross(), ND_in, ND_next, ND_out, ND_prev, ND_ranktype, NULL, Root, and transpose().
Referenced by expand_cluster(), and mincross().
void checkLabelOrder | ( | graph_t * | g | ) |
Definition at line 378 of file mincross.c.
References agbindrec(), agclose(), aghead, agnnodes(), agnode(), agopen(), Agstrictdirected, fixLabelOrder(), GD_maxrank, GD_minrank, GD_rank, ITOS, rank_t::n, ND_alg, ND_hi, ND_lo, ND_np, ND_order, ND_out, NULL, SWAP, and rank_t::v.
Referenced by flat_edges().
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Definition at line 922 of file mincross.c.
References agnameof(), Agedge_s::base, Agobj_s::data, delete_flat_edge(), ED_edge_type, elapsed_sec(), FLATORDER, free(), free_matrix(), GD_clust, GD_maxrank, GD_minrank, GD_n_cluster, GD_rank, ND_flat_out, ND_order, NULL, rec_reset_vlists(), TE_list, TI_list, and Verbose.
Referenced by conjugate_gradient_mkernel(), and dot_mincross().
Definition at line 1397 of file mincross.c.
References aghead, agtail, ED_weight, and inside_cluster().
Referenced by flat_reorder(), and LIST().
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Definition at line 558 of file mincross.c.
References agfstnode(), agnxtnode(), and do_ordering_node().
Referenced by ordered_edges().
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Definition at line 567 of file mincross.c.
References agerrorf(), agfstnode(), agnameof(), agnxtnode(), do_ordering_node(), late_string(), N_ordering, NULL, and streq().
Referenced by ordered_edges().
Definition at line 518 of file mincross.c.
References aghead, agtail, betweenclust(), ED_edge_type, edgeidcmpf(), find_flat_edge(), flat_edge(), FLATORDER, ND_clust, ND_in, ND_out, new_virtual_edge(), NULL, and TE_list.
Referenced by do_ordering(), and do_ordering_for_nodes().
int dot_mincross | ( | Agraph_t * | g | ) |
Definition at line 417 of file mincross.c.
References agfstnode(), agget(), agwarningf(), cleanup2(), GD_clust, GD_comp, GD_n_cluster, init_mccomp(), init_mincross(), mapbool(), mark_lowclusters(), merge2(), mincross(), mincross_clust(), NULL, and ReMincross.
Referenced by dotLayout(), and make_flat_adj_edges().
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Definition at line 1790 of file mincross.c.
References AGSEQ.
Referenced by do_ordering_node().
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Definition at line 258 of file mincross.c.
References agdelnode(), agfstnode(), and agnxtnode().
Referenced by fixLabelOrder().
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Definition at line 1829 of file mincross.c.
References ND_node_type, ND_weight_class, ORDINARY, SINGLETON, VIRTUAL, and VIRTUALNODE.
Referenced by virtual_weight().
void enqueue_neighbors | ( | node_queue_t * | q, |
node_t * | n0, | ||
int | pass | ||
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Definition at line 1375 of file mincross.c.
References aghead, agtail, LIST_PUSH_BACK, MARK, ND_in, and ND_out.
Referenced by build_ranks(), and install_cluster().
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Definition at line 1101 of file mincross.c.
References bitarray_new(), bitarray_reset(), GD_maxrank, NULL, and realFillRanks().
Referenced by init_mincross().
Definition at line 272 of file mincross.c.
References agdegree(), agfstnode(), agnxtnode(), and NULL.
Referenced by topsort().
Definition at line 324 of file mincross.c.
References agdegree(), agedge(), agfstnode(), agnnodes(), agnxtnode(), agsubg(), cnt(), emptyComp(), free(), getComp(), gv_calloc(), ND_hi, ND_lo, ND_order, ND_x, NULL, ordercmpf(), topsort(), and rank_t::v.
Referenced by checkLabelOrder().
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Definition at line 1192 of file mincross.c.
References flat_search(), GD_maxrank, GD_minrank, GD_rank, ND_flat_out, ND_low, ND_mark, ND_onstack, and new_matrix().
Referenced by mincross(), and mincross_clust().
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Definition at line 1678 of file mincross.c.
References aghead, agtail, ND_flat_in, ND_flat_out, ND_mval, and ND_order.
Referenced by medians().
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Definition at line 1428 of file mincross.c.
References aghead, agtail, constraining_flat_edge(), delete_flat_edge(), flat_rev(), GD_flip, GD_has_flat_edges, GD_maxrank, GD_minrank, GD_rank, LIST_APPEND, LIST_CLEAR, LIST_FREE, LIST_GET, LIST_IS_EMPTY, LIST_REVERSE, MARK, ND_flat_in, ND_flat_out, ND_order, and Root.
Referenced by mincross(), and mincross_clust().
Definition at line 1133 of file mincross.c.
References aghead, agtail, ED_edge_type, ED_label, ED_to_orig, elist_append, flat_edge(), FLATORDER, merge_oneway(), ND_flat_out, ND_other, new_virtual_edge(), NULL, and REVERSED.
Referenced by flat_reorder(), and flat_search().
Definition at line 1160 of file mincross.c.
References agcontains(), aghead, agtail, delete_flat_edge(), dot_root(), ED_edge_type, ED_weight, flat_rev(), flat_search(), flatindex, FLATORDER, GD_n_cluster, GD_rank, M, matrix_set(), ND_flat_out, ND_mark, ND_onstack, and ND_rank.
Referenced by flat_breakcycles(), and flat_search().
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Definition at line 491 of file mincross.c.
References adjmatrix_t::data, and free().
Referenced by cleanup2().
Definition at line 994 of file mincross.c.
References is_a_normal_node_of(), is_a_vnode_of_an_edge_of(), and neighbor.
Referenced by rec_reset_vlists().
Definition at line 301 of file mincross.c.
References agfstin(), agfstout(), aghead, agnnodes(), agnxtin(), agnxtout(), agsubnode(), agtail, getComp(), isBackedge, ND_idx, and ND_x.
Referenced by fixLabelOrder(), and getComp().
Definition at line 668 of file mincross.c.
References agtail, cnt(), cross(), ED_tail_port, ED_xpenalty, ND_in, and ND_order.
Referenced by transpose_step().
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Definition at line 499 of file mincross.c.
References GD_comp, GD_maxrank, GD_minrank, GD_nlist, and GD_rank.
Referenced by dot_mincross().
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Definition at line 1109 of file mincross.c.
References agnedges(), allocate_ranks(), class2(), decompose(), dot_root(), fillRanks(), GD_flags, GD_maxrank, GD_minrank, GlobalMaxRank, GlobalMinRank, gv_calloc(), mincross_options(), NEW_RANK, ordered_edges(), ReMincross, Root, start_timer(), TE_list, TI_list, and Verbose.
Referenced by dot_mincross().
Definition at line 990 of file mincross.c.
References is_a_normal_node_of(), and is_a_vnode_of_an_edge_of().
Referenced by constraining_flat_edge().
Definition at line 1251 of file mincross.c.
References agerrorf(), agnameof(), GD_maxrank, GD_minrank, GD_nlist, GD_rank, ND_next, ND_order, ND_rank, NULL, and Root.
Referenced by build_ranks(), and install_cluster().
Definition at line 974 of file mincross.c.
References agcontains(), ND_node_type, and NORMAL.
Referenced by furthestnode(), and inside_cluster().
Definition at line 978 of file mincross.c.
References agcontains(), ED_edge_type, ED_to_orig, ND_in, ND_node_type, ND_out, NORMAL, and VIRTUAL.
Referenced by furthestnode(), and inside_cluster().
Definition at line 644 of file mincross.c.
References CLUSTER, flatindex, GD_flip, GD_rank, M, matrix_get(), ND_clust, ND_node_type, ND_rank, ND_ranktype, NULL, ReMincross, SWAP, and VIRTUAL.
Referenced by reorder(), and transpose_step().
typedef LIST | ( | node_t * | ) |
Definition at line 1407 of file mincross.c.
References aghead, constraining_flat_edge(), LIST_APPEND, MARK, ND_flat_out, and ND_rank.
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Definition at line 1579 of file mincross.c.
References aghead, agtail, cross(), ED_head_port, ED_tail_port, ED_xpenalty, elist::list, and ND_order.
Referenced by rcross().
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get the value of a matrix cell
me | Matrix to inspect |
row | Row coordinate |
col | Column coordinate |
Definition at line 48 of file mincross.c.
References adjmatrix_t::data, adjmatrix_t::ncols, adjmatrix_t::nrows, NULL, and row.
Referenced by left2right(), and matrix_set().
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set the value of a matrix cell to true
me | Matrix to update |
row | Row coordinate |
col | Column coordinate |
Definition at line 70 of file mincross.c.
References adjmatrix_t::data, free(), gv_alloc(), matrix_get(), adjmatrix_t::ncols, adjmatrix_t::nrows, NULL, row, and zmax().
Referenced by flat_search().
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Definition at line 1710 of file mincross.c.
References aghead, agtail, ED_head_port, ED_tail_port, ED_xpenalty, flat_mval(), GD_rank, ND_in, ND_mval, ND_out, ordercmpf(), rm(), TI_list, and VAL.
Referenced by mincross_step().
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Definition at line 895 of file mincross.c.
References agnameof(), GD_maxrank, GD_minrank, GD_rank, merge_components(), ND_order, NULL, and Verbose.
Referenced by dot_mincross().
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Definition at line 871 of file mincross.c.
References GD_comp, GD_maxrank, GD_minrank, GD_nlist, GlobalMaxRank, GlobalMinRank, ND_next, ND_prev, and NULL.
Referenced by merge2().
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Definition at line 777 of file mincross.c.
References build_ranks(), Convergence, dot_root(), flat_breakcycles(), flat_reorder(), MaxIter, MIN, mincross_step(), MinQuit, ncross(), restore_best(), save_best(), transpose(), and Verbose.
Referenced by dot_mincross(), and mincross_clust().
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Definition at line 618 of file mincross.c.
References expand_cluster(), flat_breakcycles(), flat_reorder(), GD_clust, GD_n_cluster, mincross(), mincross_clust(), ordered_edges(), and save_vlist().
Referenced by dot_mincross(), and mincross_clust().
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Definition at line 1896 of file mincross.c.
References agget(), MAX, MaxIter, MinQuit, and scale_clamp().
Referenced by init_mincross().
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Definition at line 1551 of file mincross.c.
References GD_maxrank, GD_minrank, last, medians(), reorder(), Root, and transpose().
Referenced by mincross().
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Definition at line 1640 of file mincross.c.
References GD_maxrank, GD_minrank, GD_rank, rcross(), and Root.
Referenced by build_ranks(), and mincross().
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create an adjacency matrix
These matrices dynamically expand on demand. So the initial dimensions provided can be later safely exceeded at runtime.
initial_rows | How many rows to allocate now |
initial_columns | How many columns to allocate now |
Definition at line 482 of file mincross.c.
References gv_alloc(), and adjmatrix_t::nrows.
Referenced by flat_breakcycles().
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Definition at line 1768 of file mincross.c.
References ND_order.
Referenced by restore_best().
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Definition at line 1657 of file mincross.c.
Referenced by fixLabelOrder(), and medians().
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Definition at line 591 of file mincross.c.
References agerrorf(), agfstsubg(), agnxtsubg(), do_ordering(), do_ordering_for_nodes(), G_ordering, is_cluster(), late_string(), N_ordering, NULL, ordered_edges(), and streq().
Referenced by init_mincross(), mincross_clust(), and ordered_edges().
Definition at line 687 of file mincross.c.
References aghead, cnt(), cross(), ED_head_port, ED_xpenalty, ND_order, and ND_out.
Referenced by transpose_step().
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Definition at line 1601 of file mincross.c.
References aghead, cross(), ED_xpenalty, free(), GD_rank, gv_calloc(), local_cross(), ND_has_port, ND_in, ND_order, ND_out, Root, and top().
Referenced by ncross().
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Definition at line 1063 of file mincross.c.
References agbindrec(), agfstnode(), agfstout(), aghead, agnode(), agnxtnode(), agnxtout(), agsubg(), agsubnode(), alloc_elist, bitarray_clear(), bitarray_get(), bitarray_set(), dot_root(), GD_clust, GD_maxrank, GD_minrank, GD_n_cluster, ND_ht, ND_in, ND_lw, ND_out, ND_rank, ND_rw, ND_UF_size, NULL, and realFillRanks().
Referenced by fillRanks(), and realFillRanks().
void rec_reset_vlists | ( | graph_t * | g | ) |
Definition at line 1026 of file mincross.c.
References dot_root(), furthestnode(), GD_clust, GD_maxrank, GD_minrank, GD_n_cluster, GD_rank, GD_rankleader, ND_order, NULL, and rec_reset_vlists().
Referenced by cleanup2(), flat_edges(), and rec_reset_vlists().
void rec_save_vlists | ( | graph_t * | g | ) |
Definition at line 1016 of file mincross.c.
References GD_clust, GD_n_cluster, rec_save_vlists(), and save_vlist().
Referenced by flat_edges(), and rec_save_vlists().
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Definition at line 1499 of file mincross.c.
References exchange, GD_rank, left2right(), ND_clust, ND_mval, and Root.
Referenced by mincross_step().
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Definition at line 840 of file mincross.c.
References GD_maxrank, GD_minrank, GD_rank, ND_order, nodeposcmpf(), Root, and saveorder.
Referenced by mincross().
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Definition at line 858 of file mincross.c.
References GD_maxrank, GD_minrank, GD_rank, ND_order, and saveorder.
Referenced by mincross().
void save_vlist | ( | graph_t * | g | ) |
Definition at line 1006 of file mincross.c.
References GD_maxrank, GD_minrank, GD_rank, and GD_rankleader.
Referenced by mincross_clust(), and rec_save_vlists().
Definition at line 282 of file mincross.c.
References agdeledge(), agdelnode(), agfstout(), agnxtout(), cnt(), findSource(), and ND_np.
Referenced by fixLabelOrder().
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Definition at line 760 of file mincross.c.
References delta, GD_maxrank, GD_minrank, GD_rank, and transpose_step().
Referenced by build_ranks(), mincross(), and mincross_step().
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Definition at line 719 of file mincross.c.
References exchange, GD_maxrank, GD_minrank, GD_rank, in_cross(), left2right(), ND_order, out_cross(), and Root.
Referenced by transpose().
void virtual_weight | ( | edge_t * | e | ) |
Definition at line 1838 of file mincross.c.
References agerrorf(), aghead, agtail, ED_weight, endpoint_class(), graphviz_exit(), and table.
Referenced by make_chain().
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Definition at line 157 of file mincross.c.
Referenced by mincross().
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Definition at line 160 of file mincross.c.
Referenced by init_mincross(), and merge_components().
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Definition at line 160 of file mincross.c.
Referenced by init_mincross(), and merge_components().
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Definition at line 156 of file mincross.c.
Referenced by mincross(), and mincross_options().
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Definition at line 163 of file mincross.c.
Referenced by dot_mincross(), init_mincross(), and left2right().
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Definition at line 159 of file mincross.c.
Referenced by build_ranks(), exchange(), flat_reorder(), init_mincross(), install_in_rank(), mincross_step(), ncross(), neighbor(), rcross(), reorder(), restore_best(), and transpose_step().
Definition at line 1823 of file mincross.c.
Referenced by set_cell_heights(), set_cell_widths(), and virtual_weight().
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Definition at line 161 of file mincross.c.
Referenced by cleanup2(), do_ordering_node(), and init_mincross().
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Definition at line 162 of file mincross.c.
Referenced by cleanup2(), init_mincross(), and medians().