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Graphviz 14.0.5~dev.20251117.1017
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#include <assert.h>#include <cgraph/cgraph.h>#include <dotgen/dot.h>#include <inttypes.h>#include <limits.h>#include <stdbool.h>#include <stdint.h>#include <stdlib.h>#include <string.h>#include <util/alloc.h>#include <util/bitarray.h>#include <util/exit.h>#include <util/gv_math.h>#include <util/itos.h>#include <util/list.h>#include <util/streq.h>Go to the source code of this file.
Data Structures | |
| struct | adjmatrix_t |
| struct | info_t |
Macros | |
| #define | MARK(v) (ND_mark(v)) |
| #define | saveorder(v) (ND_coord(v)).x |
| #define | flatindex(v) ((size_t)ND_low(v)) |
| #define | ND_x(n) (((info_t*)AGDATA(n))->x) |
| #define | ND_lo(n) (((info_t*)AGDATA(n))->lo) |
| #define | ND_hi(n) (((info_t*)AGDATA(n))->hi) |
| #define | ND_np(n) (((info_t*)AGDATA(n))->np) |
| #define | ND_idx(n) (ND_order(ND_np(n))) |
| #define | isBackedge(e) (ND_idx(aghead(e)) > ND_idx(agtail(e))) |
| #define | VAL(node, port) (MC_SCALE * ND_order(node) + (port).order) |
| #define | ORDINARY 0 |
| #define | SINGLETON 1 |
| #define | VIRTUALNODE 2 |
| #define | NTYPES 3 |
| #define | C_EE 1 |
| #define | C_VS 2 |
| #define | C_SS 2 |
| #define | C_VV 4 |
Functions | |
| static bool | matrix_get (adjmatrix_t *me, size_t row, size_t col) |
| static void | matrix_set (adjmatrix_t *me, size_t row, size_t col) |
| static bool | medians (graph_t *g, int r0, int r1) |
| static int | nodeposcmpf (const void *, const void *) |
| static int | edgeidcmpf (const void *, const void *) |
| static void | flat_breakcycles (graph_t *g) |
| static void | flat_reorder (graph_t *g) |
| static void | flat_search (graph_t *g, node_t *v) |
| static void | init_mincross (graph_t *g) |
| static void | merge2 (graph_t *g) |
| static void | init_mccomp (graph_t *g, size_t c) |
| static void | cleanup2 (graph_t *g, int64_t nc) |
| static int64_t | mincross_clust (graph_t *g) |
| static int64_t | mincross (graph_t *g, int startpass) |
| static void | mincross_step (graph_t *g, int pass) |
| static void | mincross_options (graph_t *g) |
| static void | save_best (graph_t *g) |
| static void | restore_best (graph_t *g) |
| static adjmatrix_t * | new_matrix (size_t initial_rows, size_t initial_columns) |
| static void | free_matrix (adjmatrix_t *p) |
| static int | ordercmpf (const void *, const void *) |
| static int64_t | ncross (void) |
| static void | emptyComp (graph_t *sg) |
| static Agnode_t * | findSource (Agraph_t *g, Agraph_t *sg) |
| static int | topsort (Agraph_t *g, Agraph_t *sg, Agnode_t **arr) |
| static int | getComp (graph_t *g, node_t *n, graph_t *comp, int *indices) |
| static void | fixLabelOrder (graph_t *g, rank_t *rk) |
| for each pair of nodes (labels), we add an edge | |
| void | checkLabelOrder (graph_t *g) |
| int | dot_mincross (graph_t *g) |
| static int | betweenclust (edge_t *e) |
| static void | do_ordering_node (graph_t *g, node_t *n, bool outflag) |
| static void | do_ordering (graph_t *g, bool outflag) |
| static void | do_ordering_for_nodes (graph_t *g) |
| static void | ordered_edges (graph_t *g) |
| static bool | left2right (graph_t *g, node_t *v, node_t *w) |
| static int64_t | in_cross (node_t *v, node_t *w) |
| static int | out_cross (node_t *v, node_t *w) |
| static void | exchange (node_t *v, node_t *w) |
| static int64_t | transpose_step (graph_t *g, int r, bool reverse) |
| static void | transpose (graph_t *g, bool reverse) |
| static void | merge_components (graph_t *g) |
| static node_t * | neighbor (node_t *v, int dir) |
| static bool | is_a_normal_node_of (graph_t *g, node_t *v) |
| static bool | is_a_vnode_of_an_edge_of (graph_t *g, node_t *v) |
| static bool | inside_cluster (graph_t *g, node_t *v) |
| static node_t * | furthestnode (graph_t *g, node_t *v, int dir) |
| void | save_vlist (graph_t *g) |
| void | rec_save_vlists (graph_t *g) |
| void | rec_reset_vlists (graph_t *g) |
| static Agraph_t * | realFillRanks (Agraph_t *g, bitarray_t *ranks, Agraph_t *sg) |
| static void | fillRanks (Agraph_t *g) |
| static void | flat_rev (Agraph_t *g, Agedge_t *e) |
| void | allocate_ranks (graph_t *g) |
| int | install_in_rank (graph_t *g, node_t *n) |
| int | build_ranks (graph_t *g, int pass) |
| void | enqueue_neighbors (node_queue_t *q, node_t *n0, int pass) |
| static bool | constraining_flat_edge (Agraph_t *g, Agedge_t *e) |
| typedef | LIST (node_t *) |
| static void | reorder (graph_t *g, int r, bool reverse, bool hasfixed) |
| static int | local_cross (elist l, int dir) |
| static int64_t | rcross (graph_t *g, int r) |
| static bool | flat_mval (node_t *n) |
| static int | endpoint_class (node_t *n) |
| void | virtual_weight (edge_t *e) |
Variables | |
| static int | MinQuit |
| static const double | Convergence = .995 |
| static graph_t * | Root |
| static int | GlobalMinRank |
| static int | GlobalMaxRank |
| static edge_t ** | TE_list |
| static int * | TI_list |
| static bool | ReMincross |
| static int | table [NTYPES][NTYPES] |
| #define C_EE 1 |
Definition at line 1813 of file mincross.c.
| #define C_SS 2 |
Definition at line 1815 of file mincross.c.
| #define C_VS 2 |
Definition at line 1814 of file mincross.c.
| #define C_VV 4 |
Definition at line 1816 of file mincross.c.
| #define flatindex | ( | v | ) | ((size_t)ND_low(v)) |
Definition at line 112 of file mincross.c.
Definition at line 269 of file mincross.c.
| #define MARK | ( | v | ) | (ND_mark(v)) |
Definition at line 110 of file mincross.c.
Definition at line 253 of file mincross.c.
Definition at line 255 of file mincross.c.
Definition at line 252 of file mincross.c.
Definition at line 254 of file mincross.c.
Definition at line 251 of file mincross.c.
| #define NTYPES 3 |
Definition at line 1811 of file mincross.c.
| #define ORDINARY 0 |
Definition at line 1808 of file mincross.c.
| #define saveorder | ( | v | ) | (ND_coord(v)).x |
Definition at line 111 of file mincross.c.
| #define SINGLETON 1 |
Definition at line 1809 of file mincross.c.
Definition at line 1703 of file mincross.c.
| #define VIRTUALNODE 2 |
Definition at line 1810 of file mincross.c.
| void allocate_ranks | ( | graph_t * | g | ) |
Definition at line 1218 of file mincross.c.
References agfstnode(), agfstout(), aghead, agnxtnode(), agnxtout(), agtail, free(), GD_maxrank, GD_minrank, GD_rank, gv_calloc(), ND_rank, and SWAP.
Referenced by expand_cluster(), and init_mincross().
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Definition at line 506 of file mincross.c.
References aghead, agtail, ED_to_orig, and ND_clust.
Referenced by do_ordering_node().
| int build_ranks | ( | Agraph_t * | g, |
| int | pass | ||
| ) |
Definition at line 1294 of file mincross.c.
References aghead, agroot(), agtail, CLUSTER, dot_root(), enqueue_neighbors(), exchange, GD_flip, GD_maxrank, GD_minrank, GD_nlist, GD_rank, install_cluster(), install_in_rank(), LIST_FREE, LIST_IS_EMPTY, LIST_POP_FRONT, LIST_PUSH_BACK, MARK, ncross(), ND_in, ND_next, ND_out, ND_prev, ND_ranktype, NULL, Root, and transpose().
Referenced by expand_cluster(), and mincross().
| void checkLabelOrder | ( | graph_t * | g | ) |
Definition at line 378 of file mincross.c.
References agbindrec(), agclose(), aghead, agnnodes(), agnode(), agopen(), Agstrictdirected, fixLabelOrder(), GD_maxrank, GD_minrank, GD_rank, ITOS, rank_t::n, ND_alg, ND_hi, ND_lo, ND_np, ND_order, ND_out, NULL, SWAP, and rank_t::v.
Referenced by flat_edges().
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Definition at line 917 of file mincross.c.
References agnameof(), Agedge_s::base, Agobj_s::data, delete_flat_edge(), ED_edge_type, elapsed_sec(), FLATORDER, free(), free_matrix(), GD_clust, GD_maxrank, GD_minrank, GD_n_cluster, GD_rank, ND_flat_out, ND_order, NULL, rec_reset_vlists(), TE_list, TI_list, and Verbose.
Referenced by conjugate_gradient_mkernel(), and dot_mincross().
Definition at line 1392 of file mincross.c.
References aghead, agtail, ED_weight, and inside_cluster().
Referenced by flat_reorder(), and LIST().
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Definition at line 553 of file mincross.c.
References agfstnode(), agnxtnode(), and do_ordering_node().
Referenced by ordered_edges().
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Definition at line 562 of file mincross.c.
References agerrorf(), agfstnode(), agnameof(), agnxtnode(), do_ordering_node(), late_string(), N_ordering, NULL, and streq().
Referenced by ordered_edges().
Definition at line 513 of file mincross.c.
References aghead, agtail, betweenclust(), ED_edge_type, edgeidcmpf(), find_flat_edge(), flat_edge(), FLATORDER, ND_clust, ND_in, ND_out, new_virtual_edge(), NULL, and TE_list.
Referenced by do_ordering(), and do_ordering_for_nodes().
| int dot_mincross | ( | Agraph_t * | g | ) |
Definition at line 412 of file mincross.c.
References agfstnode(), agget(), agwarningf(), cleanup2(), GD_clust, GD_comp, GD_n_cluster, init_mccomp(), init_mincross(), mapbool(), mark_lowclusters(), merge2(), mincross(), mincross_clust(), NULL, and ReMincross.
Referenced by dotLayout(), and make_flat_adj_edges().
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Definition at line 1785 of file mincross.c.
References AGSEQ.
Referenced by do_ordering_node().
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Definition at line 258 of file mincross.c.
References agdelnode(), agfstnode(), and agnxtnode().
Referenced by fixLabelOrder().
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Definition at line 1824 of file mincross.c.
References ND_node_type, ND_weight_class, ORDINARY, SINGLETON, VIRTUAL, and VIRTUALNODE.
Referenced by virtual_weight().
| void enqueue_neighbors | ( | node_queue_t * | q, |
| node_t * | n0, | ||
| int | pass | ||
| ) |
Definition at line 1370 of file mincross.c.
References aghead, agtail, LIST_PUSH_BACK, MARK, ND_in, and ND_out.
Referenced by build_ranks(), and install_cluster().
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Definition at line 1096 of file mincross.c.
References bitarray_new(), bitarray_reset(), GD_maxrank, NULL, and realFillRanks().
Referenced by init_mincross().
Definition at line 272 of file mincross.c.
References agdegree(), agfstnode(), agnxtnode(), and NULL.
Referenced by topsort().
Definition at line 324 of file mincross.c.
References agdegree(), agedge(), agfstnode(), agnnodes(), agnxtnode(), agsubg(), cnt(), emptyComp(), free(), getComp(), gv_calloc(), ND_hi, ND_lo, ND_order, ND_x, NULL, ordercmpf(), topsort(), and rank_t::v.
Referenced by checkLabelOrder().
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Definition at line 1187 of file mincross.c.
References flat_search(), GD_maxrank, GD_minrank, GD_rank, ND_flat_out, ND_low, ND_mark, ND_onstack, and new_matrix().
Referenced by mincross(), and mincross_clust().
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Definition at line 1673 of file mincross.c.
References aghead, agtail, ND_flat_in, ND_flat_out, ND_mval, and ND_order.
Referenced by medians().
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Definition at line 1423 of file mincross.c.
References aghead, agtail, constraining_flat_edge(), delete_flat_edge(), flat_rev(), GD_flip, GD_has_flat_edges, GD_maxrank, GD_minrank, GD_rank, LIST_APPEND, LIST_CLEAR, LIST_FREE, LIST_GET, LIST_IS_EMPTY, LIST_REVERSE, MARK, ND_flat_in, ND_flat_out, ND_order, and Root.
Referenced by mincross(), and mincross_clust().
Definition at line 1128 of file mincross.c.
References aghead, agtail, ED_edge_type, ED_label, ED_to_orig, elist_append, flat_edge(), FLATORDER, merge_oneway(), ND_flat_out, ND_other, new_virtual_edge(), NULL, and REVERSED.
Referenced by flat_reorder(), and flat_search().
Definition at line 1155 of file mincross.c.
References agcontains(), aghead, agtail, delete_flat_edge(), dot_root(), ED_edge_type, ED_weight, flat_rev(), flat_search(), flatindex, FLATORDER, GD_n_cluster, GD_rank, M, matrix_set(), ND_flat_out, ND_mark, ND_onstack, and ND_rank.
Referenced by flat_breakcycles(), and flat_search().
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Definition at line 486 of file mincross.c.
References adjmatrix_t::data, and free().
Referenced by cleanup2().
Definition at line 989 of file mincross.c.
References is_a_normal_node_of(), is_a_vnode_of_an_edge_of(), and neighbor.
Referenced by rec_reset_vlists().
Definition at line 301 of file mincross.c.
References agfstin(), agfstout(), aghead, agnnodes(), agnxtin(), agnxtout(), agsubnode(), agtail, getComp(), isBackedge, ND_idx, and ND_x.
Referenced by fixLabelOrder(), and getComp().
Definition at line 663 of file mincross.c.
References agtail, cnt(), cross(), ED_tail_port, ED_xpenalty, ND_in, and ND_order.
Referenced by transpose_step().
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Definition at line 494 of file mincross.c.
References GD_comp, GD_maxrank, GD_minrank, GD_nlist, and GD_rank.
Referenced by dot_mincross().
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Definition at line 1104 of file mincross.c.
References agnedges(), allocate_ranks(), class2(), decompose(), dot_root(), fillRanks(), GD_flags, GD_maxrank, GD_minrank, GlobalMaxRank, GlobalMinRank, gv_calloc(), mincross_options(), NEW_RANK, ordered_edges(), ReMincross, Root, start_timer(), TE_list, TI_list, and Verbose.
Referenced by dot_mincross().
Definition at line 985 of file mincross.c.
References is_a_normal_node_of(), and is_a_vnode_of_an_edge_of().
Referenced by constraining_flat_edge().
Definition at line 1246 of file mincross.c.
References agerrorf(), agnameof(), GD_maxrank, GD_minrank, GD_nlist, GD_rank, ND_next, ND_order, ND_rank, NULL, and Root.
Referenced by build_ranks(), and install_cluster().
Definition at line 969 of file mincross.c.
References agcontains(), ND_node_type, and NORMAL.
Referenced by furthestnode(), and inside_cluster().
Definition at line 973 of file mincross.c.
References agcontains(), ED_edge_type, ED_to_orig, ND_in, ND_node_type, ND_out, NORMAL, and VIRTUAL.
Referenced by furthestnode(), and inside_cluster().
Definition at line 639 of file mincross.c.
References CLUSTER, flatindex, GD_flip, GD_rank, M, matrix_get(), ND_clust, ND_node_type, ND_rank, ND_ranktype, NULL, ReMincross, SWAP, and VIRTUAL.
Referenced by reorder(), and transpose_step().
| typedef LIST | ( | node_t * | ) |
Definition at line 1402 of file mincross.c.
References aghead, constraining_flat_edge(), LIST_APPEND, MARK, ND_flat_out, and ND_rank.
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Definition at line 1574 of file mincross.c.
References aghead, agtail, cross(), ED_head_port, ED_tail_port, ED_xpenalty, elist::list, and ND_order.
Referenced by rcross().
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get the value of a matrix cell
| me | Matrix to inspect |
| row | Row coordinate |
| col | Column coordinate |
Definition at line 48 of file mincross.c.
References adjmatrix_t::data, adjmatrix_t::ncols, adjmatrix_t::nrows, NULL, and row.
Referenced by left2right(), and matrix_set().
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set the value of a matrix cell to true
| me | Matrix to update |
| row | Row coordinate |
| col | Column coordinate |
Definition at line 70 of file mincross.c.
References adjmatrix_t::data, free(), gv_alloc(), matrix_get(), adjmatrix_t::ncols, adjmatrix_t::nrows, NULL, row, and zmax().
Referenced by flat_search().
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Definition at line 1705 of file mincross.c.
References aghead, agtail, ED_head_port, ED_tail_port, ED_xpenalty, flat_mval(), GD_rank, ND_in, ND_mval, ND_out, ordercmpf(), rm(), TI_list, and VAL.
Referenced by mincross_step().
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Definition at line 890 of file mincross.c.
References agnameof(), GD_maxrank, GD_minrank, GD_rank, merge_components(), ND_order, NULL, and Verbose.
Referenced by dot_mincross().
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Definition at line 866 of file mincross.c.
References GD_comp, GD_maxrank, GD_minrank, GD_nlist, GlobalMaxRank, GlobalMinRank, ND_next, ND_prev, and NULL.
Referenced by merge2().
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Definition at line 772 of file mincross.c.
References build_ranks(), Convergence, dot_root(), flat_breakcycles(), flat_reorder(), MaxIter, MIN, mincross_step(), MinQuit, ncross(), restore_best(), save_best(), transpose(), and Verbose.
Referenced by dot_mincross(), and mincross_clust().
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Definition at line 613 of file mincross.c.
References expand_cluster(), flat_breakcycles(), flat_reorder(), GD_clust, GD_n_cluster, mincross(), mincross_clust(), ordered_edges(), and save_vlist().
Referenced by dot_mincross(), and mincross_clust().
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Definition at line 1891 of file mincross.c.
References agget(), MAX, MaxIter, MinQuit, and scale_clamp().
Referenced by init_mincross().
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Definition at line 1546 of file mincross.c.
References GD_maxrank, GD_minrank, last, medians(), reorder(), Root, and transpose().
Referenced by mincross().
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Definition at line 1635 of file mincross.c.
References GD_maxrank, GD_minrank, GD_rank, rcross(), and Root.
Referenced by build_ranks(), and mincross().
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create an adjacency matrix
These matrices dynamically expand on demand. So the initial dimensions provided can be later safely exceeded at runtime.
| initial_rows | How many rows to allocate now |
| initial_columns | How many columns to allocate now |
Definition at line 477 of file mincross.c.
References gv_alloc(), and adjmatrix_t::nrows.
Referenced by flat_breakcycles().
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Definition at line 1763 of file mincross.c.
References ND_order.
Referenced by restore_best().
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Definition at line 1652 of file mincross.c.
Referenced by fixLabelOrder(), and medians().
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Definition at line 586 of file mincross.c.
References agerrorf(), agfstsubg(), agnxtsubg(), do_ordering(), do_ordering_for_nodes(), G_ordering, is_cluster(), late_string(), N_ordering, NULL, ordered_edges(), and streq().
Referenced by init_mincross(), mincross_clust(), and ordered_edges().
Definition at line 682 of file mincross.c.
References aghead, cnt(), cross(), ED_head_port, ED_xpenalty, ND_order, and ND_out.
Referenced by transpose_step().
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Definition at line 1596 of file mincross.c.
References aghead, cross(), ED_xpenalty, free(), GD_rank, gv_calloc(), local_cross(), ND_has_port, ND_in, ND_order, ND_out, Root, and top().
Referenced by ncross().
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Definition at line 1058 of file mincross.c.
References agbindrec(), agfstnode(), agfstout(), aghead, agnode(), agnxtnode(), agnxtout(), agsubg(), agsubnode(), alloc_elist, bitarray_clear(), bitarray_get(), bitarray_set(), dot_root(), GD_clust, GD_maxrank, GD_minrank, GD_n_cluster, ND_ht, ND_in, ND_lw, ND_out, ND_rank, ND_rw, ND_UF_size, NULL, and realFillRanks().
Referenced by fillRanks(), and realFillRanks().
| void rec_reset_vlists | ( | graph_t * | g | ) |
Definition at line 1021 of file mincross.c.
References dot_root(), furthestnode(), GD_clust, GD_maxrank, GD_minrank, GD_n_cluster, GD_rank, GD_rankleader, ND_order, NULL, and rec_reset_vlists().
Referenced by cleanup2(), flat_edges(), and rec_reset_vlists().
| void rec_save_vlists | ( | graph_t * | g | ) |
Definition at line 1011 of file mincross.c.
References GD_clust, GD_n_cluster, rec_save_vlists(), and save_vlist().
Referenced by flat_edges(), and rec_save_vlists().
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Definition at line 1494 of file mincross.c.
References exchange, GD_rank, left2right(), ND_clust, ND_mval, and Root.
Referenced by mincross_step().
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Definition at line 835 of file mincross.c.
References GD_maxrank, GD_minrank, GD_rank, ND_order, nodeposcmpf(), Root, and saveorder.
Referenced by mincross().
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Definition at line 853 of file mincross.c.
References GD_maxrank, GD_minrank, GD_rank, ND_order, and saveorder.
Referenced by mincross().
| void save_vlist | ( | graph_t * | g | ) |
Definition at line 1001 of file mincross.c.
References GD_maxrank, GD_minrank, GD_rank, and GD_rankleader.
Referenced by mincross_clust(), and rec_save_vlists().
Definition at line 282 of file mincross.c.
References agdeledge(), agdelnode(), agfstout(), agnxtout(), cnt(), findSource(), and ND_np.
Referenced by fixLabelOrder().
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Definition at line 755 of file mincross.c.
References delta, GD_maxrank, GD_minrank, GD_rank, and transpose_step().
Referenced by build_ranks(), mincross(), and mincross_step().
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Definition at line 714 of file mincross.c.
References exchange, GD_maxrank, GD_minrank, GD_rank, in_cross(), left2right(), ND_order, out_cross(), and Root.
Referenced by transpose().
| void virtual_weight | ( | edge_t * | e | ) |
Definition at line 1833 of file mincross.c.
References agerrorf(), aghead, agtail, ED_weight, endpoint_class(), graphviz_exit(), and table.
Referenced by make_chain().
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Definition at line 157 of file mincross.c.
Referenced by mincross().
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Definition at line 160 of file mincross.c.
Referenced by init_mincross(), and merge_components().
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Definition at line 160 of file mincross.c.
Referenced by init_mincross(), and merge_components().
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Definition at line 156 of file mincross.c.
Referenced by mincross(), and mincross_options().
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Definition at line 163 of file mincross.c.
Referenced by dot_mincross(), init_mincross(), and left2right().
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Definition at line 159 of file mincross.c.
Referenced by build_ranks(), exchange(), flat_reorder(), init_mincross(), install_in_rank(), mincross_step(), ncross(), neighbor(), rcross(), reorder(), restore_best(), and transpose_step().
Definition at line 1818 of file mincross.c.
Referenced by set_cell_heights(), set_cell_widths(), and virtual_weight().
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Definition at line 161 of file mincross.c.
Referenced by cleanup2(), do_ordering_node(), and init_mincross().
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Definition at line 162 of file mincross.c.
Referenced by cleanup2(), init_mincross(), and medians().